FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947232

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947232
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences828896
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA30840.3720611512180056No Hit
GTCGACCGATGCTCAA27420.3308014515693163No Hit
CATTCAACTAGGCATG26820.3235629077713006No Hit
GGGGGGGGGGGGGGGG23260.28061421456974095No Hit
ACTGGGCACTTCTCGC21370.25781280160599157No Hit
TGTAAGCTGTTGTGAC21270.25660637763965566No Hit
GCTTTAGGAACTAGTC19670.23730359417828054No Hit
CATCAGTGATTCGCAA12510.1509236381886268No Hit
TAGTTGCGACATAGCT12000.1447708759603135No Hit
CAGGAGCCTCGTGCAC9520.11485156159518203No Hit
CAGGAGCCTTCCAATG9020.10881944176350229No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)