FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947234

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947234
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9215982
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTATTAG898702597.51565269984252No Hit
GCTATTAG643810.6985799234416907No Hit
ACTATTAG326910.3547207448972882No Hit
TCTATTAA189630.20576212062914184No Hit
TCTAATAG157520.17092047271793717No Hit
TCTTTTAG157000.17035623550480025No Hit
TCAATTAG149790.16253286953034415No Hit
TATATTAG118530.12861353244830556No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)