FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947237

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947237
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences688646
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAATGACTCCTAC40980.5950807817078732No Hit
CTCCTAGTGAACGTAA36770.533946323655405No Hit
CGACCAGACGCGCTGT34800.505339463236554No Hit
TAGCTTTACCCTATCC32400.4704884657719641No Hit
CCAGGACTGTAACTCG24990.3628860111000427No Hit
CTTCCTTTGGCTCAGC22530.327163738698838No Hit
GTTCTCGACCGTAGAG22480.32643767625165904No Hit
ATCTGTACTGGGACTA22390.32513076384673695No Hit
AGACCATTGAATCCAC20900.30349410292080403No Hit
GGGGGGGGGGGGGGGG20180.29303880368142704No Hit
CGATCAAACCCGGCTA19800.28752072908286697No Hit
TGCTGCTACTTTCTTG18490.2684978929667783No Hit
ACAGCCGACTTGCGTA17330.2516532441922265No Hit
GGCAACAGAATAGCAA16810.2441021947415653No Hit
AACTTACCTCACCTAA15580.226241058540963No Hit
CGCGTTGGAGCGGTTC15490.22493414613604087No Hit
GTAACTGTGTGAAAGT14180.2059113100199522No Hit
CCCTGAACTAGCTTTG13830.20082887288969947No Hit
ATCGAAAGATTTCCGC13590.19734377314324048No Hit
AGTGGAGTGAGTTGAA13380.1942943108650889No Hit
CAATTCGGATAACGGG12730.18485549905176243No Hit
GGGTAGAACCAGTCTA12440.1806443368581245No Hit
AAGAACCCTTAACCCA12290.17846614951658762No Hit
GTGAAGCGATCCCAGG11960.1736741373652065No Hit
CGCGATCGATATCTGG11590.16830127525608224No Hit
TTCCTAAACTAATGCC11490.16684915036172432No Hit
TTTAGTCTGAGCAATA11270.1636544755941369No Hit
GCAACTTGAAGGTGCA10600.15392523880193887No Hit
TGATAGAGAGACTGTT10590.1537800263125031No Hit
CACATCCTGAGCCTAT10590.1537800263125031No Hit
CTTTAACTGTCCGTAA10460.1518922639498378No Hit
AGTCCTGCTCGAACGA10340.15014971407660832No Hit
TGGAACACTCCTAGTA10250.14884280167168618No Hit
TGCAGATACTGCCACG10090.14651940184071352No Hit
TGCAGTATGACACCGC9980.14492206445691982No Hit
TCTCAGAGATGCATGT9860.14317951458369033No Hit
CATAGGTACAAGGTGC9840.14288908960481875No Hit
AGGTGTGGATCATGTG9710.14100132724215345No Hit
TCCGGGAACGTTCTCC9680.14056568977384606No Hit
GAGTGTTACACCTGCG9570.13896835239005237No Hit
ATTTCTGACGGGTAGT9350.13577367762246495No Hit
TACGTTTACTGCACCG9350.13577367762246495No Hit
TGGCAATTGAGTGGTG9210.13374070277036387No Hit
AGAGTACCTTAATCGC9110.13228857787600598No Hit
CTATTGGGACTTGTGA9100.13214336538657018No Hit
GGTCTAAACTCCTACC9000.13069124049221226No Hit
CGAGTCTCTGCTACGC9000.13069124049221226No Hit
CTTAGATCTTGTCACA8990.13054602800277648No Hit
TTCTTAGACGTCCCGA8900.12923911559785434No Hit
TCAAAGCACTCTGCAA8660.12575401585139534No Hit
ATGTACGTGTACTTTC8640.12546359087252376No Hit
GGGTGTGCTCGCAAAG8580.12459231593590901No Hit
TACTGTTTGCTTAAGC8410.12212370361550057No Hit
AGACTACTGGCCCTAG8400.12197849112606476No Hit
CACCAGGTGCGCCACA8320.12081679121057844No Hit
TCTATGGGATGCTCAA8290.12038115374227107No Hit
CTTTCGTCTCGAACGA8250.1198003037845279No Hit
TGAACTGTGAACGTAA8200.11907424133734894No Hit
GGTCGCATGGTACTAC8150.11834817889016999No Hit
CACATTACTGATGGAC8130.1180577539112984No Hit
TCCATTTGAAATCTGC8030.11660562901694049No Hit
AGCCAATTGTTATGGC8020.1164604165275047No Hit
GCATGATACTTGCGTA7970.11573435408032573No Hit
GTAATCTCTACACAAA7950.11544392910145417No Hit
CTACAACGAATCTGTG7900.11471786665427519No Hit
CTCAATTTGGAATCTC7880.11442744167540363No Hit
ATGTCCAGACCGCTAG7880.11442744167540363No Hit
GGGATGTGACTGGAAG7780.11297531678104569No Hit
GCCATTCACCGGAAGT7700.11181361686555936No Hit
CTAGCTCACGAATAGT7690.11166840437612359No Hit
CATTCTATGCCTAGCG7670.111377979397252No Hit
TCGGACCGATAGGCGA7660.1112327669078162No Hit
GTCTAATCTAAGTTCC7640.11094234192894463No Hit
CTAACAGTGCATGATC7540.10949021703458672No Hit
TTGCGGTCTTTTGGGT7520.10919979205571513No Hit
TGAGGGATGTACGTTG7480.10861894209797196No Hit
CGAGTCTCTTGGAACG7450.10818330462966459No Hit
ACCAAGTTGAAGCTAA7360.10687639222474246No Hit
TGCGCAGACATCAGGG7340.10658596724587088No Hit
TGTAAGCACGCGCTGT7320.10629554226699929No Hit
GGCTGACTGAAACTGA7320.10629554226699929No Hit
TCCGGGTGAACACCTA7260.10542426733038456No Hit
TCGTTGCTGTATTGCG7220.10484341737264138No Hit
ACCTCAGCTAATCCGT7220.10484341737264138No Hit
TAGTACCGAACGAGCA7210.1046982048832056No Hit
GTGTGATACCGTGCAC7110.10324607998884769No Hit
ACGAGGATGAACTAGA7070.10266523003110452No Hit
CAAGGGAACTGATGAA7060.10252001754166873No Hit
GGGCCTTGACTATCTT7050.10237480505223293No Hit
AAAGCCTTGAACCAAA7000.10164874260505398No Hit
GCACTGTCTCGATGGA6920.10048704268956765No Hit
CTCCTAGTGACCATGT6910.10034183020013185No Hit
GTATTCACTGCTCCTT6890.10005140522126026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)