FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947245

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947245
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1173007
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATCCTT112478095.88860083528913No Hit
TCCTCCTT142491.2147412590035696No Hit
TCATCCTA100010.8525950825527895No Hit
TCATACTT34130.29096160551471556No Hit
TAATCCTT29100.2480803609867631No Hit
ACATCCTT27530.23469595663111986No Hit
TCAACCTT27280.23256468205219574No Hit
TCATCCAT24300.20715988907142072No Hit
TCATCATT23000.1960772612610155No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)