FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1173007
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA49760.42420889218904917No Hit
CATTCAACTAGGCATG41830.35660486254557733No Hit
GTCGACCGATGCTCAA40300.3435614621225619No Hit
ACTGGGCACTTCTCGC34670.2955651586051916No Hit
GGGGGGGGGGGGGGGG34530.29437164484099415No Hit
TGTAAGCTGTTGTGAC33000.28132824441797877No Hit
GCTTTAGGAACTAGTC25320.21585548935343096No Hit
TAGTTGCGACATAGCT19940.16999046041498475No Hit
CATCAGTGATTCGCAA19050.16240312291401499No Hit
CAGGAGCCTCGTGCAC16400.13981161237741976No Hit
CAGGAGCCTTCCAATG14530.12386967852706761No Hit
TCCTTAAACAGGGAGG13240.11287230169981935No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)