FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947248

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947248
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3587391
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTTGAT351443897.96640511168144No Hit
AAGTTGAA149190.4158732627695169No Hit
AACTTGAT65690.18311357752751234No Hit
AAGTTCAT64360.179406147810484No Hit
AATTTGAT64040.1785141346454847No Hit
AAGTAGAT58690.16360078954315269No Hit
AAGATGAT55180.15381652013956662No Hit
AAGTTGCT50640.14116108336113906No Hit
AAGTTTAT38150.10634469451476017No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)