FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947254

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947254
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4579667
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGAGC443471896.83494454946178No Hit
GGTCGCGC537081.1727490230184858No Hit
GGTCGAGA105660.23071546468334928No Hit
GGTCGACC93560.20429432969689718No Hit
GGACGAGC86040.18787392183754845No Hit
GGTCCAGC85970.18772107229630453No Hit
GGTAGAGC81880.17879029195790871No Hit
CGTCGAGC62350.13614526995085013No Hit
GCTCGAGC51010.11138364426933225No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)