FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004947260

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947260
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16518436
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCCTGA1620730898.11648027694632No Hit
TATCCTCA707410.42825482993668407No Hit
TATCCTAA438710.26558809804996064No Hit
AATCCTGA356990.21611610203290432No Hit
TATCCTGC255520.15468776826086925No Hit
TAACCTGA216140.13084773885372683No Hit
TATCCAGA173770.10519761071810915No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)