FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004947262

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947262
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15952736
Sequences flagged as poor quality0
Sequence length34
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG207570.13011561151641948No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG16600.010.4549085
TAGGACC16700.08.5467364
CTATACT17200.08.4609974
TACACTG25850.08.2839515
AGGACCG17750.08.2005245
TCTATAC12350.08.1565113
CTAGGAC23900.08.136843
GTGTAGG23300.07.92679741
TCTAGAC16800.07.82811933
GTATAGG14550.07.69319531
TAGGACT22100.07.66142754
CTAACAC25950.07.65578753
TACACAG34950.07.6487925
TGGACTG24250.07.6184895
ATACCGA4051.6316335E-97.60372076
ATACTGT23700.07.5009096
TACACCG7300.07.47736175
TATACAG19850.07.47398045
TAGACTG20050.07.4692345
GTGTTAG22300.07.4038381
Produced by FastQC (version 0.11.5)