FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004947266

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947266
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences856003
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGACTAC83551697.60666726635304No Hit
GGGCCTAC36430.4255826206216567No Hit
GGGACTAA22340.26098039376030224No Hit
GGGACAAC19350.2260506096357139No Hit
CGGACTAC13160.15373777895638216No Hit
GGGAATAC12020.14042006862125483No Hit
GCGACTAC11280.13177523910547043No Hit
GGCACTAC11100.12967244273676612No Hit
GGGACTCC9720.11355100391003303No Hit
TGGACTAC9020.1053734624761829No Hit
GGTACTAC8860.10350431014844574No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)