FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947267

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947267
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3954581
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATGCGA381447696.45714678748519No Hit
TCCTGCGA379390.9593683882059818No Hit
TCATGCGC156020.3945297871000746No Hit
TCATGCAA106240.26865045879702554No Hit
TCAAGCGA89690.22680026025513195No Hit
ACATGCGA72730.18391328942307666No Hit
TCATCCGA68720.17377315068271454No Hit
TCATGCCA67890.17167431897336277No Hit
TCATGAGA56710.14340330871968485No Hit
TAATGCGA56450.14274584336494814No Hit
TCATGCGT44330.11209784298260675No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)