FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947269

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947269
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3770461
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAGTGAACGTAA192650.5109454785502356No Hit
CGACCAGACGCGCTGT187600.497551890869578No Hit
TAGCTTTACCCTATCC168330.4464440820366528No Hit
CCAGGACTGTAACTCG134600.35698552511218123No Hit
GTTCTCGACCGTAGAG123210.3267770174522426No Hit
ATCTGTACTGGGACTA120420.3193773917831268No Hit
CTTCCTTTGGCTCAGC116580.30919296075466635No Hit
CGATCAAACCCGGCTA111580.29593198285302513No Hit
AGACCATTGAATCCAC107550.2852436346643023No Hit
NNNNNNNNNNNNNNNN106870.2834401416696791No Hit
GATGAATGACTCCTAC106480.2824057853933511No Hit
TGCTGCTACTTTCTTG96450.25580426372265885No Hit
GGCAACAGAATAGCAA94130.24965116997629733No Hit
GGGGGGGGGGGGGGGG92380.2450098277107229No Hit
ACAGCCGACTTGCGTA90500.2400237000197058No Hit
AACTTACCTCACCTAA82430.21862048168645692No Hit
CGCGTTGGAGCGGTTC79070.209709104536554No Hit
ATCGAAAGATTTCCGC76410.2026542642928809No Hit
GTAACTGTGTGAAAGT74320.19711117552999485No Hit
CCCTGAACTAGCTTTG71650.19002981333051847No Hit
AGTGGAGTGAGTTGAA70440.1868206566783213No Hit
CAATTCGGATAACGGG67280.17843971864448405No Hit
GGGTAGAACCAGTCTA66310.17586708893156566No Hit
AAGAACCCTTAACCCA63140.16745962894192515No Hit
TTCCTAAACTAATGCC62100.16470134553838378No Hit
TCCGGGAACGTTCTCC59540.15791172485274346No Hit
CGCGATCGATATCTGG59190.15698345639962857No Hit
TTTAGTCTGAGCAATA58970.15639997337195638No Hit
TGGAACACTCCTAGTA58500.1551534414492021No Hit
GTGAAGCGATCCCAGG58030.15390690952644784No Hit
TGCAGATACTGCCACG57180.15165254328316882No Hit
CTTTAACTGTCCGTAA55570.14738250839884035No Hit
CACATCCTGAGCCTAT55340.14677250341536488No Hit
TGATAGAGAGACTGTT54020.14327160524933158No Hit
GCAACTTGAAGGTGCA53560.1420515952823806No Hit
AGTCCTGCTCGAACGA53400.14162724398952806No Hit
TGCAGTATGACACCGC52830.14011549250874097No Hit
CATAGGTACAAGGTGC52740.13987679490651142No Hit
AGGTGTGGATCATGTG51940.13775503844224884No Hit
TCTCAGAGATGCATGT51790.1373572091051996No Hit
GAGTGTTACACCTGCG51640.13695937976815037No Hit
TACGTTTACTGCACCG51330.13613719913824862No Hit
CTATTGGGACTTGTGA50810.13475805743647792No Hit
TCAAAGCACTCTGCAA49740.13192020816552671No Hit
ATTTCTGACGGGTAGT49280.13070019819857573No Hit
CTTAGATCTTGTCACA49200.13048802255214945No Hit
AGAGTACCTTAATCGC48090.12754408545798512No Hit
TGGCAATTGAGTGGTG47730.12658929504906694No Hit
ATGTACGTGTACTTTC47630.1263240754910341No Hit
TGAACTGTGAACGTAA47400.12571407050755862No Hit
CGAGTCTCTGCTACGC46830.12420231902677153No Hit
GGTCTAAACTCCTACC46760.12401666533614855No Hit
GGTCGCATGGTACTAC46490.12330057252945992No Hit
TGAGGGATGTACGTTG46380.12300883101562382No Hit
TTCTTAGACGTCCCGA45960.12189490887188595No Hit
TCTATGGGATGCTCAA45150.11974663045182009No Hit
GGGTGTGCTCGCAAAG44860.1189774937335249No Hit
GGGATGTGACTGGAAG44500.11802270332460672No Hit
TCCATTTGAAATCTGC44330.11757183007595091No Hit
CACCAGGTGCGCCACA44070.11688225922506558No Hit
TACTGTTTGCTTAAGC43700.11590094686034413No Hit
GCATGATACTTGCGTA43280.11478702471660626No Hit
GTAATCTCTACACAAA42780.11346092692644215No Hit
CTACAACGAATCTGTG42630.11306309758939291No Hit
CTAGCTCACGAATAGT42200.11192265348985177No Hit
TCCGGGTGAACACCTA42040.11149830219699926No Hit
CATTCTATGCCTAGCG42040.11149830219699926No Hit
TCGGACCGATAGGCGA41760.11075568743450735No Hit
GGCTGACTGAAACTGA41550.11019872636263842No Hit
CTTTCGTCTCGAACGA41370.10972133115817932No Hit
TTGCGGTCTTTTGGGT41220.10932350182113008No Hit
AGACTACTGGCCCTAG41040.10884610661667102No Hit
AGCCAATTGTTATGGC40780.10815653576578567No Hit
ACCAAGTTGAAGCTAA40420.1072017453568675No Hit
TGCTAGTGAAGGCGTA40130.10643260863857232No Hit
CACATTACTGATGGAC39780.10550434018545743No Hit
TGTAAGCACGCGCTGT39670.10521259867162132No Hit
ATGTCCAGACCGCTAG39580.10497390106939178No Hit
CGAGTCTCTTGGAACG39490.10473520346716224No Hit
TGCGCAGACATCAGGG39400.10449650586493271No Hit
AGGCGATGACCTGCGA38920.10322345198637514No Hit
ACCTCAGCTAATCCGT38860.10306432025155544No Hit
GGGCCTTGACTATCTT38810.10293171047253903No Hit
CATAGTCGAAGATTCC38750.10277257873771933No Hit
CTAACAGTGCATGATC38580.10232170548906352No Hit
GCCATTCACCGGAAGT38550.1022421396216537No Hit
TAGTACCGAACGAGCA38160.10120778334532568No Hit
GATATGAGACCAACGC38080.10099560769889941No Hit
ATAGCCAACCGTTCTC37720.10004081728998125No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)