FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947276

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947276
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3204047
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAATGT314443598.1394779789435No Hit
GGTAATGA141300.44100476678400785No Hit
GTTAATGT49900.15574053688975223No Hit
GGTAAAGT49310.15389911571209786No Hit
GGTATTGT46730.14584679937591427No Hit
GGAAATGT45690.142600904418693No Hit
GGTAATTT41390.12918037719172035No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)