FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947301

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947301
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4586510
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATCCTT440585596.06116633344307No Hit
TCCTCCTT451780.9850191103911252No Hit
TCATCCTA415290.9054597068359167No Hit
TCATACTT123810.2699438134878154No Hit
TAATCCTT115090.2509315361789247No Hit
TCAACCTT103310.2252475193556757No Hit
TCATCCAT97250.212034858748809No Hit
TCATCATT96600.21061765917876557No Hit
ACATCCTT94950.20702015257788603No Hit
TCATCCGT46330.10101362473863569No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)