FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947305

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947305
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3671943
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCAGTCC357992897.49410598149262No Hit
CCCAGTCC219030.5964961874408181No Hit
ACCAGTCA218320.59456260622782No Hit
ACCAGACC71240.194011726216883No Hit
ACAAGTCC55220.15038359800247444No Hit
ACCACTCC44160.12026330474084156No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)