FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004947307

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947307
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences831398
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGACTAC80840997.23489832787666No Hit
GGGCCTAC44790.5387311492209507No Hit
GGGACTAA21720.2612467193810906No Hit
GGGACAAC21150.254390797187388No Hit
GGGAATAC13120.15780648979189268No Hit
CGGACTAC13090.1574456517816978No Hit
GGGACTCC12830.15431838902667555No Hit
GGCACTAC12820.1541981096899439No Hit
GCGACTAC12220.1469813494860464No Hit
GGTACTAC9970.11991849872143065No Hit
TGGACTAC9090.1093339170890476No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)