FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4070715
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACCCA382932494.07005894541868No Hit
CCCCCCCA1149902.8248108747480476No Hit
CCCACCAA342320.8409333495467013No Hit
CCCACACA159480.39177392669346783No Hit
CCCACCCC154150.3786804038111241No Hit
CCCAACCA108020.26535878832097065No Hit
CCAACCCA104080.2556798989858047No Hit
ACCACCCA96020.2358799375539678No Hit
CACACCCA74690.18348128031562022No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)