FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947312

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947312
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13393213
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAAACAT1316905198.3263015379506No Hit
GTAAACAA733910.5479715733633147No Hit
GAAAACAT299200.22339673086659637No Hit
CTAAACAT147120.10984668130044674No Hit
GTAAAAAT135200.10094665111351547No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)