FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004947323

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947323
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16360449
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAAGCCT1609884198.40097298063152No Hit
TTAAGCCA571510.34932415363416985No Hit
TAAAGCCT276680.16911516303739588No Hit
ATAAGCCT256890.15701891800157808No Hit
TTAAGCAT235650.14403638922134715No Hit
TTACGCCT191580.11709947569287373No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)