FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947330

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947330
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3118611
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCGGCA306321098.22353605499372No Hit
ATACGGCA81000.2597310148652718No Hit
AACCGGCA79290.25424780455144935No Hit
ATCCGCCA57370.1839601027508721No Hit
ATCCGGAA56720.1818758415204718No Hit
ATCCCGCA37880.12146433139625301No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)