FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947331

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947331
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3411943
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAGCTGT334407498.01084015764624No Hit
CTAGCTGA187730.550214350005261No Hit
CTAGCTAT57020.16711885280615765RNA PCR Primer, Index 38 (100% over 8bp)
CTAGCAGT53270.1561280478601196No Hit
CAAGCTGT43480.12743471974766285No Hit
CTAGATGT39280.11512501820810019No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)