FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947339

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947339
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4434699
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA166520.3754933536639127No Hit
CATTCAACTAGGCATG162890.36730790522648776No Hit
GTCGACCGATGCTCAA149730.3376328359602309No Hit
GGGGGGGGGGGGGGGG137150.30926563448838357No Hit
ACTGGGCACTTCTCGC130130.2934359242870824No Hit
TGTAAGCTGTTGTGAC126560.2853857725180446No Hit
GCTTTAGGAACTAGTC102760.23171809405779287No Hit
TAGTTGCGACATAGCT75480.17020320883108414No Hit
CATCAGTGATTCGCAA72440.16334817763279988No Hit
CAGGAGCCTCGTGCAC62450.14082128234633287No Hit
CAGGAGCCTTCCAATG54740.12343566045857904No Hit
TCCTTAAACAGGGAGG51320.11572375036050925No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)