FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947344

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947344
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1422736
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT286202.011617053339481No Hit
GGCTTGCGACGACATT121130.8513877486757908No Hit
AAATAGGTGTTGCGTA120970.8502631549352796No Hit
TATCACTACTGGTCCG102240.7186154001866826No Hit
ATGGGTTACCATGCGC98710.6938040507866533No Hit
GTGTTGTGAGGGTAGT67010.47099391594786383No Hit
CTAATCTTGCCACTTC65470.46016970119544315No Hit
CTGCTTTCTCCACTTC59910.42109006871267757No Hit
AGAGAATTGCCTCCTA53710.37751206126786696No Hit
AGCCGAGCTGCCCTTT42660.2998448060638094No Hit
CTGGCCAGAGGAATGC40710.2861388198513287No Hit
GGGGGGGGGGGGGGGG37460.26329550949719416No Hit
AATGGTGCTTCGTACA36990.2599920153844424No Hit
TCCCTGTGACCCGCAA33660.2365864081600522No Hit
GCTCCTAACCTATCTT33480.23532124020197703No Hit
GAGAGAAGACTCACGG30180.2121264943039327No Hit
TGCCGTTACAATCTGC28770.2022160119656774No Hit
GCTGTTCTGATAGGTA28220.19835022098267002No Hit
CTTAATCTGGGAATTA27210.1912512229956928No Hit
TTGTCAACTAATACAG26630.18717457068633958No Hit
TCTTTCCACCGAGTGA25610.1800052855905804No Hit
TCGTATACTTTCTGGA25420.17866983052372332No Hit
GGGATGTGAAGGTGCA25280.17768581100077596No Hit
GTAATCGTGATCCTCC25160.17684236569539255No Hit
TAGCGCGACAAGACAT23900.16798618998886652No Hit
AGTCCTGCTCCTAGTA23400.16447183454976888No Hit
GCAAATCTGGAATTGA23120.16250379550387423No Hit
GTTGTTGGATTCCATT21530.15132814520754378No Hit
TGCAATGACACCTTGA21220.14914924483530326No Hit
TTGCGTCACCACTCAA20530.14429943432934852No Hit
TGTCAATCTGGTGTCC19510.13713014923358938No Hit
CCTTTCTACTCGGGCT19010.13361579379449173No Hit
GGTTGAACTTCTTTGT18800.13213976451007076No Hit
TTGTTTGTGGCGCTGT18370.12911741883244676No Hit
TACGCCTTGCTGATCA18210.12799282509193555No Hit
TACAACCGATCGCTAA18160.12764138954802579No Hit
CAAGTGGGATAGCGAG17740.12468933097918378No Hit
TAAGGGCGATTTCTTG17340.12187784662790566No Hit
AATCCAGACTACCAAC17160.12061267866983053No Hit
TTCCACTCTCGAATCT17150.12054239156104857No Hit
AGAACGCGAGGAGTCA16710.11744975877464267No Hit
CTGCCATTGTCTTTGT16670.11716861033951485No Hit
CCTTTCTACTCATTTC16460.11569258105509385No Hit
CCCACCTCTCATGATC16430.11548171972874798No Hit
GCTCCTAACGAATAGT16420.11541143261996603No Hit
TCTTTCCACTTCGCAA16140.11344339357407136No Hit
CGGAATTTGAGAGGCT15010.10550095028171073No Hit
GTGGTAACTTTTCCGC14500.10191630773383116No Hit
AGCACATTGCTGGAAG14450.10156487218992138No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)