FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947345

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947345
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4330707
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTCAACTAGGCATG162600.37545832585764866No Hit
TGGCCGATGGTTAGAA161800.3736110524216947No Hit
GTCGACCGATGCTCAA146860.3391132210052539No Hit
GGGGGGGGGGGGGGGG130840.3021215704502752No Hit
ACTGGGCACTTCTCGC129710.2995122967219902No Hit
TGTAAGCTGTTGTGAC123750.285750109624133No Hit
GCTTTAGGAACTAGTC99110.22885408779675004No Hit
TAGTTGCGACATAGCT75940.1753524309079326No Hit
CATCAGTGATTCGCAA70910.16373769917937187No Hit
CAGGAGCCTCGTGCAC61900.14293278210694005No Hit
CAGGAGCCTTCCAATG55130.1273002306551794No Hit
TCCTTAAACAGGGAGG49070.11330713437782791No Hit
NNNNNNNNNNNNNNNN47010.1085504052802464No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)