FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947348

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947348
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4434699
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTTAC432582497.54492920489079No Hit
CCGCTTAC138580.3124902050849449No Hit
CAGCTTAA119800.27014234787975466No Hit
CAGCATAC114620.258461735508994No Hit
CAGCTAAC104420.23546130188317177No Hit
AAGCTTAC86150.19426346635927264No Hit
CACCTTAC75990.17135323051237525No Hit
CAGATTAC68560.15459899307709496No Hit
CGGCTTAC47510.10713241191792272No Hit
CATCTTAC46430.10469707188695333No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)