FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947351

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947351
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4134958
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA174400.42176970116746043No Hit
CATTCAACTAGGCATG151290.36588037895427233No Hit
GTCGACCGATGCTCAA132920.3214542928851998No Hit
ACTGGGCACTTCTCGC121220.29315896316238277No Hit
GGGGGGGGGGGGGGGG121010.29265109826992197No Hit
TGTAAGCTGTTGTGAC118130.2856860940304593No Hit
GCTTTAGGAACTAGTC85380.2064833548490698No Hit
TAGTTGCGACATAGCT68550.16578161132470995No Hit
CATCAGTGATTCGCAA66830.16162195601503088No Hit
CAGGAGCCTCGTGCAC57170.1382601709618332No Hit
CAGGAGCCTTCCAATG50840.12295167206051427No Hit
TCCTTAAACAGGGAGG46330.11204466889385574No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)