FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947354

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947354
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4134958
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATCCTT396994896.00939114738287No Hit
TCCTCCTT417631.0099981668495785No Hit
TCATCCTA386860.9355838680828198No Hit
TCATACTT120490.291393528060019No Hit
TAATCCTT99210.2399298856239894No Hit
TCAACCTT93340.2257338526775846No Hit
TCATCCAT87820.21238426121861453No Hit
TCATCATT87520.21165873994367052No Hit
ACATCCTT87490.21158618781617614No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)