FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947360

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947360
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3290167
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGATTG323546998.33753119522505No Hit
TTAGATTA99580.30265940908166666No Hit
ATAGATTG51960.15792511443947982No Hit
TTAGAATG47300.14376169963409152No Hit
TTAGATAG37130.1128514145330617No Hit
TTAGATTT35710.10853552418463866No Hit
TAAGATTG34910.10610403666440033No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)