FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3797410
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT796872.0984565796161068No Hit
AAATAGGTGTTGCGTA316090.8323831242873432No Hit
TATCACTACTGGTCCG273140.7192797195983578No Hit
ATGGGTTACCATGCGC267610.7047171624870636No Hit
GGCTTGCGACGACATT189180.4981816553914379No Hit
GTGTTGTGAGGGTAGT178890.47108423899447255No Hit
CTAATCTTGCCACTTC174000.45820704111486515No Hit
CTGCTTTCTCCACTTC154710.40740926052230336No Hit
AGAGAATTGCCTCCTA143450.37775747153981265No Hit
GGGGGGGGGGGGGGGG127050.33457014122783685No Hit
AGCCGAGCTGCCCTTT112560.29641255487292656No Hit
CTGGCCAGAGGAATGC111580.293831848549406No Hit
AATGGTGCTTCGTACA99510.2620470267893117No Hit
GCTCCTAACCTATCTT86760.22847151084554998No Hit
TCCCTGTGACCCGCAA85070.2240211091243769No Hit
GAGAGAAGACTCACGG82050.21606832024985448No Hit
TGCCGTTACAATCTGC77840.20498181655391437No Hit
CTTAATCTGGGAATTA75450.19868805317308377No Hit
TTGTCAACTAATACAG74010.19489599490178833No Hit
GCTGTTCTGATAGGTA72670.19136727401044398No Hit
TCTTTCCACCGAGTGA68960.18159745721425918No Hit
GTAATCGTGATCCTCC68400.1801227678865332No Hit
TAGCGCGACAAGACAT65600.17274932124790318No Hit
TCGTATACTTTCTGGA62990.1658762156311802No Hit
AGTCCTGCTCCTAGTA62000.16326917556966458No Hit
GGGATGTGAAGGTGCA61700.1624791634298114No Hit
GCAAATCTGGAATTGA56790.14954929807421374No Hit
TGCAATGACACCTTGA55290.14559923737494765No Hit
TTGCGTCACCACTCAA54590.14375587571529017No Hit
GTTGTTGGATTCCATT54440.14336086964536354No Hit
TGTCAATCTGGTGTCC52560.13841012690228338No Hit
CCTTTCTACTCGGGCT51610.13590842179274823No Hit
TACGCCTTGCTGATCA50950.13417039508507114No Hit
TTGTTTGTGGCGCTGT50280.13240603463939896No Hit
TACAACCGATCGCTAA49150.12943032224595183No Hit
GGTTGAACTTCTTTGT49030.12911431739001056No Hit
CAAGTGGGATAGCGAG47800.12587526761661236No Hit
TAAGGGCGATTTCTTG47430.1249009193107934No Hit
CCCACCTCTCATGATC47230.12437424455089127No Hit
TTCCACTCTCGAATCT45810.12063485375558604No Hit
AGAACGCGAGGAGTCA45180.11897582826189429No Hit
AATCCAGACTACCAAC45070.1186861571439481No Hit
CCTTTCTACTCATTTC44860.11813314864605087No Hit
CTGCCATTGTCTTTGT44360.11681646174629551No Hit
TCTTTCCACTTCGCAA42960.11312973842698049No Hit
GCTCCTAACGAATAGT42810.11273473235705389No Hit
GTGGTAACTTTTCCGC42000.11060169957945021No Hit
GCGACGTTGAGTGGTG41320.10881100539578291No Hit
CGGAATTTGAGAGGCT40100.10559828936037984No Hit
GAGAGGTTGATGTGGG39050.10283324687089358No Hit
CGTTTGCTGGCTAATC38410.10114788763920673No Hit
AGCACATTGCTGGAAG38150.10046321045133393No Hit
TATTGCTTGTTCGTTT38100.1003315417613584No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)