FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947366

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947366
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3797410
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGCATTC373492298.35445738016175No Hit
ATGCATTA137870.3630632457385429No Hit
ATGCAATC72820.19176228008037055No Hit
ATGCATAC51470.1355397494608167No Hit
AAGCATTC46150.1215302008474197No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)