FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004947368

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947368
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16388630
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATCGACTTTCCATT500550.3054251636652972No Hit
AACTTACCTGAATCTC476000.29044526601674453No Hit
GGGGGGGGGGGGGGGG419260.2558237021642444No Hit
GCTGGACACGCCCTGA207890.1268501393954223No Hit
ATTACCTACCGAGGAT189780.1157997953459197No Hit
CATAGTCGACTACTCC164070.10011208990623377No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)