FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947372

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947372
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2801932
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCAGTG270490896.53724644281161No Hit
CATCAGTA112370.40104470772309964No Hit
CATAAGTG74300.26517417267799503No Hit
CATCACTG73420.26203348261128395No Hit
CAACAGTG70450.2514336536361339No Hit
CAGCAGTG70200.25054141213990916No Hit
CCTCAGTG67340.24033416942309807No Hit
CATCAGGG59350.21181813120375514No Hit
CTTCAGTG53660.19151071474967987No Hit
CATCAGTC52720.1881558867238748No Hit
AATCAGTG52520.187442093526895No Hit
CATCAGAG50010.17848398890479855No Hit
CATCAGTT37750.13472846592993692No Hit
CATCATTG33350.11902501559638136No Hit
CATGAGTG31440.11220829056522429No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)