FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947385

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947385
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2532781
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT75600.29848613046291805No Hit
TCGCGGTGAGTCTTGA66430.26228086834195297No Hit
GGGGGGGGGGGGGGGG58070.2292736719045192No Hit
GTTAAGAGAGTACGTT51480.20325484121998705No Hit
CGCTTACTGATCACAC45400.17924960744730792No Hit
TACCAGTGATACGATC45170.1783415147223546No Hit
TTGTGGTGAAAGACAT40980.16179843421124843No Hit
ATCTTACTGGTTTGGT40830.1612061998254093No Hit
ATTCCTAACTGCGTGC39730.15686314766258908No Hit
ATATGCCGAGAACAGC39300.15516540908985024No Hit
ATAGATGGAGAGTAAT39250.15496799762790386No Hit
TGGAACACTTGAGGCA36230.14304434532634286No Hit
CTTGACGCTCAGGGTA35310.13941197442652958No Hit
CTTTCTGCTCTTGTGA34810.13743785980706583No Hit
GCTATACGACAGGTGA34180.1349504753865415No Hit
GCGGTTCGAAGCAAGC33410.13191033887256734No Hit
AGGTAGCGATTGACCA33180.13100224614761402No Hit
AGCTCTGCTGGCCTGT33140.13084431697805693No Hit
TGTGACTGACCGTTAA32160.126975052323908No Hit
ACTGGAACTCTGGAAG30740.12136856680463096No Hit
AGTTCACGACCAGAGA30660.12105270846551675No Hit
TGTACCCTGCTGAGAG30300.11963134593950286No Hit
ACCCTTTCTAGGTGAC29700.11726240839614638No Hit
TTCCAAACTCCGCTAG28580.11284039164854759No Hit
ACATGTGTGTCAATGC28250.11153747599970151No Hit
TCAGTCCACCCAGCAC28180.11126109995297657No Hit
ACACTCCACCGTACAT27980.11047145410519109No Hit
TCCCAGACTCCTAACA27060.10683908320537781No Hit
CAGTGGAGAGATCATC26930.10632581340431722No Hit
ACGCTCTTGCCTCAAA26500.1046280748315784No Hit
CACAGCTCTCTCTGGG26450.10443066336963203No Hit
GAACTACTGGCCCTGA26090.10300930084361813No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)