FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947390

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947390
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4351790
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTTAC423808197.38707520353694No Hit
CCGCTTAC149700.34399637850172No Hit
CAGCTTAA129880.29845190140149225No Hit
CAGCATAC115360.26508632080132544No Hit
CAGCTAAC104820.24086640210120433No Hit
AAGCTTAC91520.21030426560105153No Hit
CACCTTAC83380.191599318900958No Hit
CAGATTAC76780.17643314590088216No Hit
CATCTTAC50890.1169403854505847No Hit
CAGCTTCC49730.11427481565057139No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)