FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947404

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947404
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3338984
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTCGAG327393998.05195233040949No Hit
AGCACGAG60420.18095324805389904No Hit
AGCTCGAA53900.1614263500513929No Hit
AGCTCGCG49690.14881772419394643No Hit
AGCTCAAG44060.13195630766724248No Hit
AGCTCCAG40290.12066544793266455No Hit
AGCTCGAT36510.10934463896802142No Hit
AGCTCGGG34190.10239641759289653No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)