FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947411

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947411
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4343398
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGTACT425614497.99111202795599No Hit
ATCGTACA178160.4101857577868756No Hit
ATAGTACT93490.2152462196648799No Hit
ATCGAACT88190.20304379198038033No Hit
AACGTACT76630.17642868555909452No Hit
ATCGTAAT56420.12989829621876695No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)