FastQCFastQC Report
Sat 10 Sep 2022
EGAF00004947416

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947416
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17019049
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACCATC1658314097.43869942439204No Hit
CAACCATA695770.4088183775720958No Hit
CAACCCTC634040.3725472557250408No Hit
CCACCATC586290.34449045889696894No Hit
CAACCAAC553200.3250475393777878No Hit
CACCCATC366910.21558783925000746No Hit
AAACCATC278840.16383994193800136No Hit
CAACAATC213490.12544179172408518RNA PCR Primer, Index 36 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)