FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3920549
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGGTAAA384046997.95742892130669No Hit
TAGGAAAA126040.3214855878602716No Hit
AAGGTAAA122090.3114104682788048No Hit
TAGCTAAA86210.21989267319449396No Hit
TACGTAAA71130.18142867236195748No Hit
TATGTAAA58320.14875467695978292No Hit
TAGGTAAT48050.1225593660479693No Hit
TAGTTAAA42040.1072298803050287No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)