FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947423

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947423
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6787365
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTAGGTT667956698.41176951585777No Hit
CGTAGGTA303820.44762584596526045No Hit
CGTAGGGT112890.16632375008563707No Hit
CGTAGGAT88960.13106706358063844No Hit
CGAAGGTT85780.1263818875218881No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)