FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947427

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947427
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1987541
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGCTAA194028197.62218741651115No Hit
CGTGCAAA80030.4026583602552098No Hit
CGAGCTAA44740.2251022746197437No Hit
CGTGGTAA40600.20427251563615545No Hit
AGTGCTAA38340.1929016810219261No Hit
CGGGCTAA37960.19098977077705567No Hit
CCTGCTAA24070.12110441998429214No Hit
CGTCCTAA23960.12055097228182965No Hit
CGTGCTTA23920.1203497185718433No Hit
CGTGCTAT20220.10173375039810499No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)