FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947435

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947435
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4290203
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA177370.4134303201969697No Hit
CATTCAACTAGGCATG155180.36170782594669765No Hit
GTCGACCGATGCTCAA144140.3359747778834708No Hit
ACTGGGCACTTCTCGC124650.29054569212692266No Hit
GGGGGGGGGGGGGGGG124240.2895900263926905No Hit
TGTAAGCTGTTGTGAC122720.2860470704999274No Hit
GCTTTAGGAACTAGTC90790.2116216878315548No Hit
TAGTTGCGACATAGCT70890.16523693634077455No Hit
CATCAGTGATTCGCAA67950.15838411375871955No Hit
CAGGAGCCTCGTGCAC58600.13659027323415698No Hit
CAGGAGCCTTCCAATG52630.12267484778692289No Hit
TCCTTAAACAGGGAGG47970.11181289090516229No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)