FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4290203
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATCCTT412364796.11775946266413No Hit
TCCTCCTT416920.9717955071123673No Hit
TCATCCTA389320.9074628869543003No Hit
TCATACTT114690.2673300074611854No Hit
TAATCCTT102620.2391961406022046No Hit
TCAACCTT97840.2280544766762785No Hit
ACATCCTT95740.22315960340338206No Hit
TCATCCAT90940.2119713216367617No Hit
TCATCATT85300.19882509056098277No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)