FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947441

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947441
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3901564
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGCATTC384587798.57270058878952No Hit
ATGCATTA134900.34575877776194364No Hit
ATGCAATC71750.1839006101143029No Hit
ATGCATAC51950.13315173094687155No Hit
AAGCATTC46160.11831152840245604No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)