FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947444

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947444
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3901564
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT815772.0908794524452246No Hit
AAATAGGTGTTGCGTA321380.8237209488297514No Hit
TATCACTACTGGTCCG278480.7137650439669835No Hit
ATGGGTTACCATGCGC270040.6921326934531896No Hit
GGCTTGCGACGACATT218780.5607494840530618No Hit
GTGTTGTGAGGGTAGT185050.4742969742390487No Hit
CTAATCTTGCCACTTC175470.44974271856106934No Hit
CTGCTTTCTCCACTTC159630.4091436152271243No Hit
AGAGAATTGCCTCCTA146170.3746446296920927No Hit
CTGGCCAGAGGAATGC114380.2931644848066058No Hit
AGCCGAGCTGCCCTTT114320.2930107003242802No Hit
AATGGTGCTTCGTACA104680.26830266016397525No Hit
GGGGGGGGGGGGGGGG102170.2618693426533565No Hit
GCTCCTAACCTATCTT91380.23421376658181178No Hit
TCCCTGTGACCCGCAA89440.22924140165328571No Hit
GAGAGAAGACTCACGG84720.21714368904367584No Hit
TGCCGTTACAATCTGC79580.20396948505778711No Hit
CTTAATCTGGGAATTA75700.1940247552007349No Hit
GCTGTTCTGATAGGTA75210.19276884859507623No Hit
TTGTCAACTAATACAG73360.18802716039003844No Hit
TCTTTCCACCGAGTGA71510.18328547218500066No Hit
GTAATCGTGATCCTCC71150.1823627652910474No Hit
TCGTATACTTTCTGGA70820.18151695063825687No Hit
TAGCGCGACAAGACAT67510.1730331733632974No Hit
GGGATGTGAAGGTGCA66520.17049572940492583No Hit
AGTCCTGCTCCTAGTA62690.16067915328314492No Hit
GCAAATCTGGAATTGA59530.15257983721399931No Hit
TGCAATGACACCTTGA56670.14524944355648145No Hit
GTTGTTGGATTCCATT56180.1439935369508228No Hit
TTGCGTCACCACTCAA55360.14189181569237364No Hit
TGTCAATCTGGTGTCC54100.13866234156353707No Hit
CCTTTCTACTCGGGCT52720.13512529847004945No Hit
TACGCCTTGCTGATCA51710.13253659301756937No Hit
GGTTGAACTTCTTTGT51390.1317164091118331No Hit
CAAGTGGGATAGCGAG50190.1286407194653221No Hit
TTGTTTGTGGCGCTGT50150.12853819647710507No Hit
TACAACCGATCGCTAA50100.1284100427418338No Hit
CCCACCTCTCATGATC47310.12125906431369575No Hit
AATCCAGACTACCAAC46780.11990063471982006No Hit
AGAACGCGAGGAGTCA46650.11956743500811469No Hit
CCTTTCTACTCATTTC45300.11610728415578984No Hit
TTCCACTCTCGAATCT45270.11603039191462705No Hit
TAAGGGCGATTTCTTG45220.11590223817935577No Hit
TCTTTCCACTTCGCAA44900.1150820542736195No Hit
GTGGTAACTTTTCCGC44350.11367236318563528No Hit
GCTCCTAACGAATAGT44160.1131853789916044No Hit
CTGCCATTGTCTTTGT43920.1125702410623022No Hit
GAGAGGTTGATGTGGG42670.10936639768051992No Hit
CGGAATTTGAGAGGCT42150.1080335988336985No Hit
GCGACGTTGAGTGGTG41220.10564993935765248No Hit
ATGTGTGTGCCTTTGC39280.10067757442912637No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)