FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947450

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947450
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1544149
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT232721.507108446140884No Hit
AAATAGGTGTTGCGTA136310.8827515997484698No Hit
GGCTTGCGACGACATT120570.7808184313819456No Hit
TATCACTACTGGTCCG114740.7430630075206472No Hit
ATGGGTTACCATGCGC113550.7353564973328351No Hit
GTGTTGTGAGGGTAGT76230.4936699761486748No Hit
CTAATCTTGCCACTTC71350.4620668083196634No Hit
CTGCTTTCTCCACTTC67540.43739302360070176No Hit
AGAGAATTGCCTCCTA62670.40585461636150394No Hit
GGGGGGGGGGGGGGGG50700.32833619035468725No Hit
CTGGCCAGAGGAATGC48550.3144126635447745No Hit
AGCCGAGCTGCCCTTT48150.31182223995223257No Hit
AATGGTGCTTCGTACA44690.2894150758767451No Hit
TCCCTGTGACCCGCAA35710.23126006622417916No Hit
GCTCCTAACCTATCTT33140.21461659464209734No Hit
TGCCGTTACAATCTGC32430.2100185927653355No Hit
CTTAATCTGGGAATTA31590.20457870322099747No Hit
TTGTCAACTAATACAG31150.20172923726920136No Hit
GAGAGAAGACTCACGG31000.20075782842199813No Hit
TCTTTCCACCGAGTGA30280.19609506595542273No Hit
GGGATGTGAAGGTGCA28560.18495624450749248No Hit
GCTGTTCTGATAGGTA28430.18411435683991637No Hit
TAGCGCGACAAGACAT28420.1840495962501028No Hit
GTAATCGTGATCCTCC27890.18061728498998478No Hit
TCGTATACTTTCTGGA27270.1766021284215448No Hit
AGTCCTGCTCCTAGTA25880.16760040643746169No Hit
TGCAATGACACCTTGA23970.15523113378307404No Hit
TTGCGTCACCACTCAA23410.15160454075351534No Hit
GCAAATCTGGAATTGA23310.1509569348553799No Hit
TGTCAATCTGGTGTCC23280.15076265308593925No Hit
GTTGTTGGATTCCATT23070.14940268069985474No Hit
TACGCCTTGCTGATCA21830.1413723675629748No Hit
TACAACCGATCGCTAA21740.14078952225465288No Hit
CCTTTCTACTCGGGCT21710.14059524048521224No Hit
CAAGTGGGATAGCGAG21560.13962383163800904No Hit
TTGTTTGTGGCGCTGT21030.136191520377891No Hit
GGTTGAACTTCTTTGT20420.13224112439926458No Hit
CCCACCTCTCATGATC19740.12783740429194332No Hit
AATCCAGACTACCAAC19360.12537650187902852No Hit
TTCCACTCTCGAATCT19330.12518222010958788No Hit
TAAGGGCGATTTCTTG19200.12434033244201174No Hit
AGAACGCGAGGAGTCA18590.12038993646338533No Hit
CCTTTCTACTCATTTC18390.11909472466711438No Hit
GAGGTGCCTTCGTACA18320.11864140053841955No Hit
CTGCCATTGTCTTTGT17930.1161157375356912No Hit
TCTTTCCACTTCGCAA17900.11592145576625054No Hit
GTGGTAACTTTTCCGC17790.11520908927830152No Hit
CGGAATTTGAGAGGCT17460.11307198981445443No Hit
TATTGCTTGTTCGTTT17060.11048156622191253No Hit
CGTTTGCTGGCTAATC16830.10899207265620092No Hit
GAGAGGTTGATGTGGG16600.10750257909048933No Hit
AGCACATTGCTGGAAG16500.10685497319235385No Hit
ATGTGTGTGCCTTTGC16390.10614260670440481No Hit
GCTCCTAACGAATAGT16170.10471787372850679No Hit
CTTAGAGACGCTCTTC15770.10212745013596486No Hit
CCAGCTTTGGGAATGC15590.100961759519321No Hit
CTAATCACTGCTCAGC15520.10050843539062615No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)