FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947463

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947463
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1459921
Sequences flagged as poor quality0
Sequence length8
%GC74

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTACGGG142329197.49096012729456No Hit
GGTACGGA102940.70510664618154No Hit
GGTCCGGG56800.38906214788334437No Hit
GGAACGGG28600.19590101108210653No Hit
GGTAGGGG17670.12103394635737139No Hit
GGTAAGGG17260.11822557521948104No Hit
CGTACGGG16320.11178687065943979No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)