FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947465

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947465
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1494635
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT300962.013601983092862No Hit
GGCTTGCGACGACATT128020.8565301896449634No Hit
AAATAGGTGTTGCGTA125550.8400044157938226No Hit
TATCACTACTGGTCCG108520.7260635539780615No Hit
ATGGGTTACCATGCGC103040.6893990840573117No Hit
GTGTTGTGAGGGTAGT69440.46459503490818826No Hit
CTAATCTTGCCACTTC66940.4478685431560213No Hit
CTGCTTTCTCCACTTC62790.42010256684742425No Hit
AGAGAATTGCCTCCTA59270.39655166646037326No Hit
AGCCGAGCTGCCCTTT44740.29933729639677914No Hit
CTGGCCAGAGGAATGC43400.29037189681761766No Hit
AATGGTGCTTCGTACA39930.26715552626561No Hit
GGGGGGGGGGGGGGGG37760.2526369314247291No Hit
TCCCTGTGACCCGCAA36450.24387224974659363No Hit
GCTCCTAACCTATCTT36220.2423334125053943No Hit
GAGAGAAGACTCACGG31150.2084120872319998No Hit
TTGTCAACTAATACAG29690.19864381604873432No Hit
TGCCGTTACAATCTGC29690.19864381604873432No Hit
GCTGTTCTGATAGGTA29300.19603448333539628No Hit
CTTAATCTGGGAATTA28750.19235465514991953No Hit
TCTTTCCACCGAGTGA27680.1851957166799921No Hit
GTAATCGTGATCCTCC26560.17770224837502133No Hit
TCGTATACTTTCTGGA26380.1764979409688653No Hit
GGGATGTGAAGGTGCA26320.1760965051668133No Hit
TAGCGCGACAAGACAT26180.17515982162869195No Hit
AGTCCTGCTCCTAGTA25060.16766635332372118No Hit
GCAAATCTGGAATTGA24520.16405343110525314No Hit
GTTGTTGGATTCCATT22620.15134129737360627No Hit
TGCAATGACACCTTGA22370.14966864819838957No Hit
TTGCGTCACCACTCAA21690.14511904244180018No Hit
TGTCAATCTGGTGTCC21290.14244280376145346No Hit
TACGCCTTGCTGATCA19960.13354431014930065No Hit
CCTTTCTACTCGGGCT19760.13220619080912732No Hit
GGTTGAACTTCTTTGT19750.13213928484211865No Hit
TTGTTTGTGGCGCTGT19460.13019901179886728No Hit
CAAGTGGGATAGCGAG18900.1264522776463819No Hit
TACAACCGATCGCTAA18670.12491344040518254No Hit
TTCCACTCTCGAATCT18210.12183576592278383No Hit
GCTCCTAACGAATAGT17860.11949405707748047No Hit
CTGCCATTGTCTTTGT17820.11922643320944577No Hit
TAAGGGCGATTTCTTG17430.11661710049610775No Hit
CCTTTCTACTCATTTC17430.11661710049610775No Hit
AGAACGCGAGGAGTCA16890.11300417827763969No Hit
CCCACCTCTCATGATC16820.11253583650857901No Hit
TCTTTCCACTTCGCAA16810.11246893054157035No Hit
AATCCAGACTACCAAC16750.11206749473951835No Hit
AGCACATTGCTGGAAG15720.10517618013762557No Hit
CGGAATTTGAGAGGCT15240.10196469372120952No Hit
TATTGCTTGTTCGTTT15040.10062657438103617No Hit
CTTAGAGACGCTCTTC14990.10029204454599283No Hit
TAGACCTGACTTAGTG14970.10015823261197548No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)