FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004947466

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947466
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1057044
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGACG102206196.69048781318469No Hit
ATTGGCCG114841.0864259198292596No Hit
ATTGGACC34640.3277063206451198No Hit
ATAGGACG23640.2236425352208612No Hit
ATTGGACA21810.20633010546391634No Hit
ATTGCACG20440.19336943400653142No Hit
AATGGACG17250.16319093623349643No Hit
ATTGAACG14790.1399184896749804No Hit
ATTGGAAG14660.13868864493814828No Hit
ATTCGACG13010.12307907712450948No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)