FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947479

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947479
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12987473
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTAGGTT1279861498.54583720790025No Hit
CGTAGGTA571900.44034740245465764No Hit
CGAAGGTT193750.14918221581673358No Hit
CGTAGGAT172310.13267400055422637No Hit
CGTAGGGT140170.10792707711500152No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)