FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004947487

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947487
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20266419
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATGCTCT1993190898.34943213204069No Hit
TATGCTCA878720.43358424593905814No Hit
AATGCTCT439090.2166588976572526No Hit
TAAGCTCT281350.13882570966286645No Hit
TATGCACT275670.13602304383423633No Hit
TATGCTAT207520.10239598816150007No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)